YB955 & YB9800 Genomics Dashboard

Main Comparison of High vs Low DEGenes

High DEGenes - M vs Y Samples

Low DEGenes - M vs Y Samples

Highest 100 Genes Scatter Plot

Lowest 100 Genes Scatter Plot

Citation

If you use this dashboard, please cite the following papers:

Perez RK, Chavez Rios JS, Grifaldo J, Regner K, Pedraza-Reyes M, Robleto EA. 2024. "Draft genome of Bacillus subtilis strain YB955, prophage-cured derivative of strain 168." Microbiol Resour Announc 13:e00263-24. https://doi.org/10.1128/mra.00263-24

Martin HA, Sundararajan A, Ermi TS, Heron R, Gonzales J, Lee K, Anguiano-Mendez D, Schilkey F, Pedraza-Reyes M, Robleto EA. "Mfd Affects Global Transcription and the Physiology of Stressed Bacillus subtilis Cells." Front Microbiol. 2021 Jan 28;12:625705. doi: 10.3389/fmicb.2021.625705. PMID: 33603726; PMCID: PMC7885715. https://doi.org/10.3389/fmicb.2021.625705

@article{Perez2024,
  author    = {Perez, RK and Chavez Rios, JS and Grifaldo, J and Regner, K and Pedraza-Reyes, M and Robleto, EA},
  title     = {Draft genome of Bacillus subtilis strain YB955, prophage-cured derivative of strain 168},
  journal   = {Microbiol Resour Announc},
  year      = {2024},
  volume    = {13},
  pages     = {e00263-24},
  doi       = {10.1128/mra.00263-24}
}
    

Download YB955 FASTQ Files

Raw sequencing files for Bacillus subtilis strain YB955 (ENA: SRR28543202)

📄 ENA Record: SRR28543202

Prefer the Command Line?

Use curl or wget to download:

curl -O ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR285/002/SRR28543202/SRR28543202_1.fastq.gz

curl -O ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR285/002/SRR28543202/SRR28543202_2.fastq.gz